Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCC1

Cell type

Cell type Class
Muscle
Cell type
SYO-1
NA
NA

Attributes by original data submitter

Sample

source_name
SYO1 (Synovial Sarcoma)
cell type
Synovial Sarcoma
cell line
SYO1
chip antibody
CST (D7F8S)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
10690608
Reads aligned (%)
89.6
Duplicates removed (%)
4.5
Number of peaks
648 (qval < 1E-05)

hg19

Number of total reads
10690608
Reads aligned (%)
89.0
Duplicates removed (%)
4.9
Number of peaks
635 (qval < 1E-05)

Base call quality data from DBCLS SRA